GSFA
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Guided Sparse Factor Analysis Project
– In-house scripts
Yifan Zhou (
zhouyf@uchicago.edu
)
Simulation study
Simulation and GSFA run
;
Normal scenario results
Count-based scenario results
LUHMES neural progenitor CROP-seq study
Preprocessing of LUHMES CROP-seq data
;
GSFA application on processed CROP-seq data
;
GSFA result interpretation
;
Alternative differential expression methods
;
Permutation results
.
Primary human CD8+ T cell CROP-seq study
Preprocessing of T cell CROP-seq data
;
GSFA application on processed CROP-seq data
;
GSFA result interpretation
;
Alternative differential expression methods
;
Permutation results
.